Publications

  • Toth, E. G., Cseke, K., Benke, A., Lados, B. B., Tomov, V. T., Zhelev, P., Kampel, J. D., Borovics, A. & Kobolkuti, Z. A. (2023). Key triggers of adaptive genetic variability of sessile oak [Q. petraea (Matt.) Liebl.] from the Balkan refugia: outlier detection and association of SNP loci from ddRAD-seq data. Heredity.
  • Reutimann, O., Dauphin, B., Baltensweiler, A., Gugerli, F., Kremer, A. & Rellstab, C. (2023). Abiotic factors predict taxonomic composition and genetic admixture in populations of hybridizing white oak species (Quercus sect. Quercus) on regional scale. Tree Genetics & Genomes, 19.
  • Gugerli, F., Brodbeck, S., Lendvay, B., Dauphin, B., Bagnoli, F., van der Knaap, W. O., Tinner, W., Hohn, M., Vendramin, G. G., Morales-Molino, C. & Schworer, C. (2023). A range-wide postglacial history of Swiss stone pine based on molecular markers and palaeoecological evidence. Journal of Biogeography, 50, 1049-1062.
  • Dauphin, B., Rellstab, C., Wueest, R. O., Karger, D. N., Holderegger, R., Gugerli, F. & Manel, S. (2023). Re-thinking the environment in landscape genomics. Trends in Ecology & Evolution, 38, 261-274.
  • Neophytou, C., Heer, K., Milesi, P., Peter, M., Pyhajarvi, T., Westergren, M., Rellstab, C. & Gugerli, F. (2022). Genomics and adaptation in forest ecosystems. Tree Genetics & Genomes, 18.
  • Kersten, B., Rellstab, C., Schroeder, H., Brodbeck, S., Fladung, M., Krutovsky, K. V. & Gugerli, F. (2022). The mitochondrial genome sequence of Abies alba Mill. reveals a high structural and combinatorial variation. Bmc Genomics, 23.
  • Gugerli, F., Brodbeck, S., Bebi, P., Bollmann, K., Dauphin, B., Gossner, M., Krumm, F., Peter, M., Queloz, V., Reiss, G., Rellstab, C., Stofer, S., von Arx, G., Wasem, U. & Zweifel, R. (2022). Die Arve - Portrait eines Gebirgswaldbaums. WSL Merkblatt, 72.
  • Gugerli, F., Brodbeck, S., Bebi, P., Bollmann, K., Dauphin, B., Gossner, M., Krumm, F., Peter, M., Queloz, V., Reiss, G., Rellstab, C., Stofer, S., von Arx, G., Wasem, U. & Zweifel, R. (2022). L'arole - portrait d'un montagnard. WSL Notice pour le practicien, 72.
  • Fonti, P., Rellstab, C. & Martinez-Sancho, E. (2022). Deciphering 'time to hydraulic failure' to select drought-resistant tree provenances. Tree Physiology, 42, 704-707.
  • Toth, E. G., Kobolkuti, Z. A., Cseke, K., Kampel, J. D., Takacs, R., Tomov, V. T., Abran, P., Stojnic, S., Vastag, E., Mataruga, M., Danicic, V., Tahirukaj, E., Zhelev, P., Orlovic, S., Benke, A. & Borovics, A. (2021). A genomic dataset of single-nucleotide polymorphisms generated by ddRAD tag sequencing in Q. petraea (Matt.) Liebl. populations from Central-Eastern Europe and Balkan Peninsula (vol 78, 43, 2021). Annals of Forest Science, 78.
  • Rellstab, C., Dauphin, B. & Exposito-Alonso, M. (2021). Prospects and limitations of genomic offset in conservation management. Evolutionary Applications, 14, 1202-1212.
  • Rellstab, C. (2021). Genomics helps to predict maladaptation to climate change. Nature Climate Change, 11, 85-86.
  • Opgenoorth, L. & Rellstab, C. (2021). Tackling the challenges of evolutionary forest research with multidata approaches. Molecular Ecology, 30, 3893-3895.
  • Opgenoorth, L., Dauphin, B., Benavides, R., Heer, K., Alizoti, P., Martinez-Sancho, E., Alia, R., Ambrosio, O., Audrey, A., Aunon, F., Avanzi, C., Avramidou, E., Bagnoli, F., Barbas, E., Bastias, C. C., Bastien, C., Ballesteros, E., Beffa, G., Bernier, F., Bignalet, H., Bodineau, G., Bouic, D., Brodbeck, S., Brunetto, W., Buchovska, J., Buy, M., Cabanillas-Saldana, A. M., Carvalho, B., Cheval, N., Climent, J. M., Correard, M., Cremer, E., Danusevicius, D., Del Cano, F., Denou, J. L., di Gerardi, N., Dokhelar, B., Ducousso, A., Nilsen, A. E., Farsakoglou, A. M., Fonti, P., Ganopoulos, I., del Barrio, J. M. G., Gilg, O., Gonzalez-Martinez, S. C., Graf, R., Gray, A., Grivet, D., Gugerli, F., Hartleitner, C., Hollenbach, E., Hurel, A., Issehut, B., Jean, F., Jorge, V., Jouineau, A., Kappner, J. P., Karkkainen, K., Kesalahti, R., Knutzen, F., Kujala, S. T., Kumpula, T. A., Labriola, M., Lalanne, C., Lambertz, J., Lascoux, M., Lejeune, V., Le-Provost, G., Levillain, J., Liesebach, M., Lopez-Quiroga, D., Meier, B., Malliarou, E., Marchon, J., Mariotte, N., Mas, A., Matesanz, S., Meischner, H., Michotey, C., Milesi, P., Morganti, S., Nievergelt, D., Notivol, E., Ostreng, G., Pakull, B., Perry, A., Piotti, A., Plomion, C., Poinot, N., Pringarbe, M., Puzos, L., Pyhajarvi, T., Raffin, A., Ramirez-Valiente, J. A., Rellstab, C., Remi, D., Richter, S., Robledo-Arnuncio, J. J., San Segundo, S., Savolainen, O., Schueler, S., Schneck, V., Scotti, I., Semerikov, V., Slamova, L., Sonstebo, J. H., Spanu, I., Thevenet, J., Tollefsrud, M. M., Turion, N., Vendramin, G. G., Villar, M., von Arx, G., Westin, J., Fady, B., Myking, T., Valladares, F., Aravanopoulos, F. A. & Cavers, S. (2021). The GenTree Platform: growth traits and tree-level environmental data in 12 European forest tree species. Gigascience, 10.
  • Martinez-Sancho, E., Rellstab, C., Guillaume, F., Bigler, C., Fonti, P., Wohlgemuth, T. & Vitasse, Y. (2021). Post-glacial re-colonization and natural selection have shaped growth responses of silver fir across Europe. Science of the Total Environment, 779.
  • Dauphin, B., Rellstab, C., Schmid, M., Zoller, S., Karger, D. N., Brodbeck, S., Guillaume, F. & Gugerli, F. (2021). Genomic vulnerability to rapid climate warming in a tree species with a long generation time. Global Change Biology, 27, 1181-1195.
  • Benavides, R., Carvalho, B., Bastias, C. C., Lopez-Quiroga, D., Mas, A., Cavers, S., Gray, A., Albet, A., Alia, R., Ambrosio, O., Aravanopoulos, F., Aunon, F., Avanzi, C., Avramidou, E. V., Bagnoli, F., Ballesteros, E., Barbas, E., Bastien, C., Bernier, F., Bignalet, H., Bouic, D., Brunetto, W., Buchovska, J., Cabanillas-Saldana, A. M., Cheval, N., Climent, J. M., Correard, M., Cremer, E., Danusevicius, D., Dauphin, B., Del Cano, F., Denou, J. L., Dokhelar, B., Dourthe, R., Farsakoglou, A. M., Fera, A., Fonti, P., Ganopoulos, I., del Barrio, J. M. G., Gilg, O., Gonzalez-Martinez, S. C., Graf, R., Grivet, D., Gugerli, F., Hartleitner, C., Heer, K., Hollenbach, E., Hurel, A., Issehuth, B., Jean, F., Jorge, V., Jouineau, A., Kappner, J. P., Karkkainen, K., Kesalahti, R., Knutzen, F., Kujala, S. T., Kumpula, T., Labriola, M., Lalanne, C., Lambertz, J., Lascoux, M., Le Provost, G., Liesebach, M., Malliarou, E., Marchon, J., Mariotte, N., Martinez-Sancho, E., Matesanz, S., Meischner, H., Michotey, C., Milesi, P., Morganti, S., Myking, T., Nilsen, A. E., Notivol, E., Opgenoorth, L., Ostreng, G., Pakull, B., Piotti, A., Plomion, C., Poinot, N., Pringarbe, M., Puzos, L., Pyhajarvi, T., Raffin, A., Ramirez-Valiente, J. A., Rellstab, C., Richter, S., Robledo-Arnuncio, J. J., San Segundo, S., Savolainen, O., Schneck, V., Schueler, S., Scotti, I., Semerikov, V., Sonstebo, J. H., Spanu, I., Thevenet, J., Tollefsrud, M. M., Turion, N., Vendramin, G. G., Villar, M., Westin, J., Fady, B. & Valladares, F. (2021). The GenTree Leaf Collection: Inter- and intraspecific leaf variation in seven forest tree species in Europe. Global Ecology and Biogeography, 30, 590-597.
  • Waldvogel, A. M., Feldmeyer, B., Rolshausen, G., Exposito-Alonso, M., Rellstab, C., Kofler, R., Mock, T., Schmid, K., Schmitt, I., Bataillon, T., Savolainen, O., Bergland, A., Flatt, T., Guillaume, F. & Pfenninger, M. (2020). Evolutionary genomics can improve prediction of species' responses to climate change. Evolution Letters, 4, 4-18.
  • Reutimann, O., Gugerli, F. & Rellstab, C. (2020). A species-discriminatory single-nucleotide polymorphism set reveals maintenance of species integrity in hybridizing European white oaks (Quercus spp.) despite high levels of admixture. Ann Bot, 125, 663-676.
  • Olsson, S., Grivet, D., Cattonaro, F., Vendramin, V., Giovannelli, G., Scotti-Saintagne, C., Vendramin, G. G. & Fady, B. (2020). Evolutionary relevance of lineages in the European black pine (Pinus nigra) in the transcriptomic era. Tree Genetics & Genomes, 16.
  • Mayol, M., Riba, M., Cavers, S., Grivet, D., Vincenot, L., Cattonaro, F., Vendramin, G. G. & Gonzalez-Martinez, S. C. (2020). A multiscale approach to detect selection in nonmodel tree species: Widespread adaptation despite population decline in Taxus baccata L. Evolutionary Applications, 13, 143-160.
  • Mataruga, M., Piotti, A., Danicic, V., Cvjetkovic, B., Fussi, B., Konnert, M., Vendramin, G. G. & Aleksic, J. M. (2020). Towards the dynamic conservation of Serbian spruce (Picea omorika) western populations. Annals of Forest Science, 77.
  • Martinez-Sancho, E., Slamova, L., Morganti, S., Grefen, C., Carvalho, B., Dauphin, B., Rellstab, C., Gugerli, F., Opgenoorth, L., Heer, K., Knutzen, F., von Arx, G., Valladares, F., Cavers, S., Fady, B., Alia, R., Aravanopoulos, F., Avanzi, C., Bagnoli, F., Barbas, E., Bastien, C., Benavides, R., Bernier, F., Bodineau, G., Bastias, C. C., Charpentier, J. P., Climent, J. M., Correard, M., Courdier, F., Danusevicius, D., Farsakoglou, A. M., del Barrio, J. M. G., Gilg, O., Gonzalez-Martinez, S. C., Gray, A., Hartleitner, C., Hurel, A., Jouineau, A., Karkkainen, K., Kujala, S. T., Labriola, M., Lascoux, M., Lefebvre, M., Lejeune, V., Le-Provost, G., Liesebach, M., Malliarou, E., Mariotte, N., Matesanz, S., Michotey, C., Milesi, P., Myking, T., Notivol, E., Pakull, B., Piotti, A., Plomion, C., Pringarbe, M., Pyhajarvi, T., Raffin, A., Ramirez-Valiente, J. A., Ramskogler, K., Robledo-Arnuncio, J. J., Savolainen, O., Schueler, S., Semerikov, V., Spanu, I., Thevenet, J., Tollefsrud, M. M., Turion, N., Veisse, D., Vendramin, G. G., Villar, M., Westin, J. & Fonti, P. (2020). The GenTree Dendroecological Collection, tree-ring and wood density data from seven tree species across Europe (vol 7, 1, 2020). Scientific Data, 7.
  • Kobolkuti, Z. A., Toth, E. G., Jahn, D., Heinze, B. & Hohn, M. (2020). SNP marker development in Pinus sylvestris L. in stress-responsive genes characterized from Pinus cembra L. transcriptomes. Molecular Biology Reports, 47, 4841-4847.
  • Fady, B., Aravanopoulos, F., Benavides, R., Gonzalez-Martinez, S., Grivet, D., Lascoux, M., Lindner, M., Rellstab, C., Valladares, F. & Vinceti, B. (2020). Genetics to the rescue: managing forests sustainably in a changing world. Tree Genetics & Genomes, 16, 80.
  • Estravis-Barcala, M., Mattera, M. G., Soliani, C., Bellora, N., Opgenoorth, L., Heer, K. & Arana, M. V. (2020). Molecular bases of responses to abiotic stress in trees. Journal of Experimental Botany, 71, 3765-3779.
  • Dauphin, B., Wuest, R. O., Brodbeck, S., Zoller, S., Fischer, M. C., Holderegger, R., Gugerli, F. & Rellstab, C. (2020). Disentangling the effects of geographic peripherality and habitat suitability on neutral and adaptive genetic variation in Swiss stone pine. Molecular Ecology, 29, 1972-1989.
  • Bose, A. K., Moser, B., Rigling, A., Lehmann, M. M., Milcu, A., Peter, M., Rellstab, C., Wohlgemuth, T. & Gessler, A. (2020). Memory of environmental conditions across generations affects the acclimation potential of scots pine. Plant Cell and Environment, 43, 1288-1299.
  • Avanzi, C., Heer, K., Buntgen, U., Labriola, M., Leonardi, S., Opgenoorth, L., Piermattei, A., Urbinati, C., Vendramin, G. G. & Piotti, A. (2020). Individual reproductive success in Norway spruce natural populations depends on growth rate, age and sensitivity to temperature. Heredity, 124, 685-698.
  • Wu, D., Koch, J., Coggeshall, M. & Carlson, J. (2019). The first genetic linkage map for Fraxinus pennsylvanica and syntenic relationships with four related species. Plant Molecular Biology, 99, 251-264.
  • Semizer-Cuming, D., Krutovsky, K. V., Baranchikov, Y. N., Kjaer, E. D. & Williams, C. G. (2019). Saving the world's ash forests calls for international cooperation now. Nature Ecology & Evolution, 3, 141-144.
  • Scotti-Saintagne, C., Giovannelli, G., Scotti, I., Roig, A., Spanu, I., Vendramin, G. G., Guibal, F. & Fady, B. (2019). Recent, Late Pleistocene fragmentation shaped the phylogeographic structure of the European black pine (Pinus nigra Arnold). Tree Genetics & Genomes, 15.
  • Rellstab, C., Dauphin, B., Zoller, S., Brodbeck, S. & Gugerli, F. (2019). Using transcriptome sequencing and pooled exome capture to study local adaptation in the giga-genome of Pinus cembra. Molecular Ecology Resources, 19, 536-551.
  • Popescu, F., Postolache, D. & Curtu, A. L. (2019). The Current State of Forest Genetic Resources in Romania. In: M. Šijačić-Nikolić, J. Milovanović & M. Nonić (Eds.), Forests of Southeast Europe Under a Changing Climate: Conservation of Genetic Resources, pp. 61-72, Cham. Springer International Publishing.
  • Oreshkova, Bondar, Putintseva, Sharov, Kuzmin & Krutovsky (2019). Development of Nuclear Microsatellite Markers with Long (Tri-, Tetra-, Penta-and exanucleotide) Motifs for Three Larch Species Based on the de novo Whole Genome Sequencing of Siberian Larch (Larix sibirica Ledeb.). Russian Journal of Genetics, 55, 444-450.
  • Mosca, E., Cruz, F., Gomez-Garrido, J., Bianco, L., Rellstab, C., Brodbeck, S., Csillery, K., Fady, B., Fladung, M., Fussi, B., Gomory, D., Gonzalez-Martinez, S. C., Grivet, D., Gut, M., Hansen, O. K., Heer, K., Kaya, Z., Krutovsky, K. V., Kersten, B., Liepelt, S., Opgenoorth, L., Sperisen, C., Ullrich, K. K., Vendramin, G. G., Westergren, M., Ziegenhagen, B., Alioto, T., Gugerli, F., Heinze, B., Hohn, M., Troggio, M. & Neale, D. B. (2019). A Reference Genome Sequence for the European Silver Fir (Abies alba Mill.): A Community-Generated Genomic Resource. G3-Genes Genomes Genetics, 9, 2039-2049.
  • Meger, J., Ulaszewski, B., Vendramin, G. G. & Burczyk, J. (2019). Using reduced representation libraries sequencing methods to identify cpDNA polymorphisms in European beech (Fagus sylvatica L). Tree Genetics & Genomes, 15.
  • Kuzmin, D. A., Feranchuk, S. I., Sharov, V. V., Cybin, A. N., Makolov, S. V., Putintseva, Y. A., Oreshkova, N. V. & Krutovsky, K. V. (2019). Stepwise large genome assembly approach: a case of Siberian larch (Larix sibirica Ledeb). Bmc Bioinformatics, 20(Suppl. 1), 37.
  • Konopkova, A., Krajmerova, D., Kurjak, D., Kmet, J., Psidova, E., Kucerova, J., Hrivnak, M., Longauer, R., Ditmarova, L. & Gomory, D. (2019). Nucleotide polymorphisms associated with climate and physiological traits in silver fir (Abies alba Mill.) provenances. Flora, 250, 37-43 %38 Jan %! Nucleotide polymorphisms associated with climate and physiological traits in silver fir (Abies alba Mill.) provenances %@ 0367-2530.
  • Chen, J., Li, L. L., Milesi, P., Jansson, G., Berlin, M., Karlsson, B., Aleksic, J., Vendramin, G. G. & Lascoux, M. (2019). Genomic data provide new insights on the demographic history and the extent of recent material transfers in Norway spruce. Evolutionary Applications, 12, 1539-1551.
  • Carbognani, M., Piotti, A., Leonardi, S., Pasini, L., Spanu, I., Vendramin, G. G., Tomaselli, M. & Petraglia, A. (2019). Reproductive and genetic consequences of extreme isolation in Salix herbacea L. at the rear edge of its distribution. Annals of Botany, 124, 849-860.
  • Brenner, W. G., Mader, M., Muller, N. A., Hoenicka, H., Schroeder, H., Zorn, I., Fladung, M. & Kersten, B. (2019). High Level of Conservation of Mitochondrial RNA Editing Sites Among Four Populus Species. G3: Genes, Genomes, Genetics, 9, 709-717.
  • Bondar, E. I., Putintseva, Y. A., Oreshkova, N. V. & Krutovsky, K. V. (2019). Siberian larch (Larix sibirica Ledeb.) chloroplast genome and development of polymorphic chloroplast markers. BMC Bioinformatics, 20(Suppl. 1), 38.
  • Avanzi, C., Piermattei, A., Piotti, A., Büntgen, U., Heer, K., Opgenoorth, L., Spanu, I., Urbinati, C., Vendramin, G. G. & Leonardi, S. (2019). Disentangling the effects of spatial proximity and genetic similarity on individual growth performances in Norway spruce natural populations. Science of The Total Environment, 650, 493-504.
  • Aravanopoulos, F. A., Alizoti, P. G., Tourvas, N., Malliarou, E., Avramidou, E. V., Korompoki, I.-V., Kotina, V.-M., Barbas, E. & Farsakoglou, A.-M. (2019). Overview on Forest Genetic Monitoring (FGM) Including Case Studies on FGM for Two Species from Greece. In: M. Šijačić-Nikolić, J. Milovanović & M. Nonić (Eds.), Forests of Southeast Europe Under a Changing Climate: Conservation of Genetic Resources, pp. 401-407, Cham. Springer International Publishing.
  • Wohlmuth, A., Essl, F. & Heinze, B. (2018). Genetic analysis of inherited reduced susceptibility of Fraxinus excelsior L. seedlings in Austria to ash dieback. Forestry, 91, 514-525.
  • Wachowiak, W., Zaborowska, J., Labiszak, B., Perry, A., Zucca, G. M., Gonzalez-Martinez, S. C. & Cavers, S. (2018). Molecular signatures of divergence and selection in closely related pine taxa. Tree Genetics & Genomes, 14.
  • Trujillo-Moya, C., George, J. P., Fluch, S., Geburek, T., Grabner, M., Karanitsch-Ackerl, S., Konrad, H., Mayer, K., Sehr, E. M., Wischnitzki, E. & Schueler, S. (2018). Drought Sensitivity of Norway Spruce at the Species' Warmest Fringe: Quantitative and Molecular Analysis Reveals High Genetic Variation Among and Within Provenances. G3-Genes Genomes Genetics, 8, 1225-1245.
  • Semerikov, V. L., Semerikova, S. A., Putintseva, Y. A., Tarakanov, V. V., Tikhonova, I. V., Vidyakin, A. I., Oreshkova, N. V. & Krutovsky, K. V. (2018). Colonization history of Scots pine in Eastern Europe and North Asia based on mitochondrial DNA variation. Tree Genetics & Genomes, 14, 8.
  • Santini, F., Andrisano, T., Leonardi, S., Ciaschetti, G., Labriola, M., Vendramin, G. G. & Piotti, A. (2018). Tracking the origin of silver fir plantations along the boundary between different genetic clusters in central Apennines: Implications for their management. Forest Ecology and Management, 408, 220-227.
  • Raffl, H., Konrad, H., Curtu, A. L. & Geburek, T. (2018). Genetic evidence of human mediated, historical seed transfer from the Tyrolean Alps to the Romanian Carpathians in Larix decidua (Mill.) forests. Annals of Forest Science, 75.
  • Piotti, A., Garbarino, M., Avanzi, C., Berretti, R., Motta, R., Piovani, P. & Leonardi, S. (2018). Influence of Spatiotemporal Dynamics on the Fine-Scale Spatial Genetic Structure of Differently Managed Picea abies Stands. Forests, 9.
  • Paule, J., Paule, L. & Gomory, D. (2018). Small genome size variation across the range of European beech (Fagus sylvatica). Plant Systematics and Evolution, 304, 577-582 %578 Apr %! Small genome size variation across the range of European beech (Fagus sylvatica) %@ 0378-2697.
  • Neuschulz, E. L., Merges, D., Bollmann, K., Gugerli, F. & Böhning-Gaese, K. (2018). Biotic interactions and seed deposition rather than abiotic factors determine recruitment at elevational range limits of an alpine tree. Journal of Ecology, 106, 948-959.
  • Mueller, M., Cuervo-Alarcon, L., Gailing, O., Rajendra, K. C., Chhetri, M. S., Seifert, S., Arend, M., Krutovsky, K. V. & Finkeldey, R. (2018). Genetic Variation of European Beech Populations and Their Progeny from Northeast Germany to Southwest Switzerland. Forests, 9, 469.
  • Mosca, E., Di Pierro, E. A., Budde, K. B., Neale, D. B. & Gonzalez-Martinez, S. C. (2018). Environmental effects on fine-scale spatial genetic structure in four Alpine keystone forest tree species. Molecular Ecology, 27, 647-658.
  • Lu, M., Seeve, C. M., Loopstra, C. A. & Krutovsky, K. V. (2018). Exploring the genetic basis of gene transcript abundance and metabolite levels in loblolly pine (Pinus taeda L.) using association mapping and network construction. BMC Genetics, 19, 100.
  • Lendvay, B., Hartmann, M., Brodbeck, S., Nievergelt, D., Reinig, F., Zoller, S., Parducci, L., Gugerli, F., Büntgen, U. & Sperisen, C. (2018). Improved recovery of ancient DNA from subfossil wood – application to the world’s oldest Late Glacial pine forest. New Phytologist, 217, 1737–1748.
  • Konopkova, A., Kurjak, D., Kmet, J., Klumpp, R., Longauer, R., Ditmarova, L. & Gomory, D. (2018). Differences in photochemistry and response to heat stress between silver fir (Abies alba Mill.) provenances. Trees-Structure and Function, 32, 73-86 %78 Feb %! Differences in photochemistry and response to heat stress between silver fir (Abies alba Mill.) provenances %@ 0931-1890.
  • Kobolkuti, Z. A. & Hohn, M. (2018). Habitat type differentation in peripheral Pinus sylvestris populations based on seed traits and germination data. Studia botanica hungarica, 49, 97-119.
  • Johnson, J. S., Krutovsky, K. V., Rajora, O. P., Gaddis, K. D. & Cairns, D. M. (2018). Advancing Biogeography Through Population Genomics. In: O. P. Rajora (Ed. Population Genomics: Concepts, Approaches and Applications, pp. 1-47 Springer International Publishing AG.
  • Heer, K., Ullrich, K. K., Hiss, M., Liepelt, S., Brüning, R. S., Zhou, J., Opgenoorth, L. & Rensing, S. A. (2018). Detection of somatic epigenetic variation in Norway spruce via targeted bisulfite sequencing. Ecology and Evolution, 8, 9672-9682.
  • Heer, K., Behringer, D., Piermattei, A., Bässler, C., Brandl, R., Fady, B., Jehl, H., Liepelt, S., Lorch, S., Piotti, A., Vendramin, G. g., Weller, M., Ziegenhagen, B., Büntgen, U. & Opgenoorth, L. (2018). Linking dendroecology and association genetics in natural populations: Stress responses archived in tree rings associate with SNP genotypes in silver fir (<i>Abies alba</i> Mill.). Molecular Ecology, 27, 1428-1438.
  • Gomory, D., Paule, L. & Macejovsky, V. (2018). Phylogeny of beech in western Eurasia as inferred by approximate Bayesian computation. Acta Societatis Botanicorum Poloniae, 87.
  • Cuervo-Alarcon, L., Arend, M., Müller, M., Sperisen, C., Finkeldey, R. & Krutovsky, K. V. (2018). Genetic variation and signatures of natural selection in populations of European beech (Fagus sylvatica L.) along precipitation gradients. Tree Genetics & Genomes, 14, 84.
  • Csillery, K., Rodriguez-Verdugo, A., Rellstab, C. & Guillaume, F. (2018). Detecting the genomic signal of polygenic adaptation and the role of epistasis in evolution. Molecular Ecology, 27, 606-612.
  • Bruegmann, T., Wetzel, H., Hettrich, K., Smeds, A., Willfor, S., Kersten, B. & Fladung, M. (2018). Knockdown of PCBER1, a gene of neolignan biosynthesis, resulted in increased poplar growth. Planta.
  • Breidenbach, N., Gailing, O. & Krutovsky, K. V. (2018). Development of novel polymorphic nuclear and chloroplast microsatellite markers in coast redwood (Sequoia sempervirens). Plant Genetic Resources: Characterization and Utilization.
  • Blanc-Jolivet, C., Yanbaev, Y., Kersten, B. & Degen, B. (2018). A set of SNP markers for timber tracking of Larix spp. in Europe and Russia. Forestry, 91, 614-628.
  • Benito-Garzon, M., Fady, B., Davi, H., Vizcaino-Palomar, N. & Fernandez-Manjarres, J. (2018). Trees on the move: using decision theory to compensate for climate change at the regional scale in forest social-ecological systems. Regional Environmental Change, 18, 1427-1437.
  • Ammer, C., Fichtner, A., Fischer, A., Gossner, M. M., Meyer, P., Seidl, R., Thomas, F. M., Annighöfer, P., Kreyling, J., Ohse, B., Berger, U., Feldmann, E., Häberle, K.-H., Heer, K., Heinrichs, S., Huth, F., Krämer-Klement, K., Mölder, A., Müller, J., Mund, M., Opgenoorth, L., Schall, P., Scherer-Lorenzen, M., Seidel, D., Vogt, J. & Wagner, S. (2018). Key ecological research questions for Central European forests. Basic and Applied Ecology, 32, 3-25.
  • Uhrinova, V., Zozomova-Lihova, J., Bernatova, D., Paule, J., Paule, L. & Gomory, D. (2017). Origin and genetic differentiation of pink- flowered Sorbus hybrids in the Western Carpathians. Annals of Botany, 120, 271-284.
  • Tsuda, Y., Semerikov, V., Sebastiani, F., Vendramin, G. G. & Lascoux, M. (2017). Multispecies genetic structure and hybridization in the Betula genus across Eurasia. Molecular Ecology, 26, 589-605.
  • Toth, E. G., Vendramin, G. G., Bagnoli, F., Cseke, K. & Hohn, M. (2017). High genetic diversity and distinct origin of recently fragmented Scots pine (Pinus sylvestris L.) populations along the Carpathians and the Pannonian Basin. Tree Genetics & Genomes, 13.
  • Toth, E. G., Kobolkuti, Z. A., Pedryc, A. & Hohn, M. (2017). Evolutionary history and phylogeography of Scots pine (Pinus sylvestris L.) in Europe based on molecular markers. Journal of Forestry Research, 28, 637-651.
  • Tóth, E. G., Bede-Fazekas, Á., Vendramin, G. G., Bagnoli, F. & Höhn, M. (2017). Mid-Pleistocene and Holocene demographic fluctuation of Scots pine (Pinus sylvestris L.) in the Carpathian Mountains and the Pannonian Basin: Signs of historical expansions and contractions. Quaternary International.
  • Schroeder, H., Kersten, B. & Fladung, M. (2017). Development of Multiplexed Marker Sets to Identify the Most Relevant Poplar Species for Breeding. Forests, 8.
  • Piotti, A., Leonarduzzi, C., Postolache, D., Bagnoli, F., Spanu, I., Brousseau, L., Urbinati, C., Leonardi, S. & Vendramin, G. G. (2017). Unexpected scenarios from Mediterranean refugial areas: disentangling complex demographic dynamics along the Apennine distribution of silver fir. Journal of Biogeography, 44, 1547-1558.
  • Oreshkova, N. V., Putintseva, Y. A., Sharov, V. V., Kuzmin, D. A. & Krutovsky, K. V. (2017). Development of microsatellite genetic markers in Siberian larch (Larix sibirica Ledeb.) based on the de novo whole genome sequencing. Russian Journal of Genetics, 53, 1194-1199.
  • Mosner, E., Eimert, K., Hüwe, U., Ziegenhagen, B., Janßen, A. & Leyer, I. (2017). Revisiting the provenance delineation of a widespread shrub, Frangula alnus—the role of spatial, temporal and environmental patterns. Tree Genetics & Genomes, 13, 63.
  • Lu, M., Krutovsky, K. V., Nelson, C. D., West, J. B., Reilly, N. A. & Loopstra, C. A. (2017). Association genetics of growth and adaptive traits in loblolly pine (Pinus taeda L.) using whole-exome-discovered polymorphisms. Tree Genetics & Genomes, 13, 57.
  • Krajmerova, D., Hrivnak, M., Ditmarova, L., Jamnicka, G., Kmet, J., Kurjak, D. & Gomory, D. (2017). Nucleotide polymorphisms associated with climate, phenology and physiological traits in European beech (Fagus sylvatica L.). New Forests, 48, 463-477 %468 May %! Nucleotide polymorphisms associated with climate, phenology and physiological traits in European beech (Fagus sylvatica L.) %@ 0169-4286.
  • Kobolkuti, Z. A., Toth, E. G., Ladanyi, M. & Hohn, M. (2017). Morphological and anatomical differentiation in peripheral Pinus sylvestris L. populations from the Carpathian region. Dendrobiology, 77, 105-117.
  • Kersten, B., Pakull, B. & Fladung, M. (2017). Genomics of sex determination in dioecious trees and woody plants. Trees-Structure and Function, 31, 1113-1125.
  • Johnson, S. J., Chhetri, K. P., Krutovsky, V. K. & Cairns, M. D. (2017). Growth and Its Relationship to Individual Genetic Diversity of Mountain Hemlock (Tsuga mertensiana) at Alpine Treeline in Alaska: Combining Dendrochronology and Genomics. Forests, 8, 1-15.
  • Johnson, J. S., Gaddis, K. D., Cairns, D. M. & Krutovsky, K. V. (2017). Seed dispersal at alpine treeline: an assessment of seed movement within the alpine treeline ecotone. Ecosphere, 8, e01649-n/a.
  • Johnson, J. S., Gaddis, K. D., Cairns, D. M., Konganti, K. & Krutovsky, K. V. (2017). Landscape genomic insights into the historic migration of mountain hemlock in response to Holocene climate change. American Journal of Botany, 104, 439-450.
  • Jansen, S., Konrad, H. & Geburek, T. (2017). The extent of historic translocation of Norway spruce forest reproductive material in Europe. Annals of Forest Science, 74.
  • Hrivnak, M., Paule, L., Krajmerova, D., Kulac, S., Sevik, H., Turna, I., Tvauri, I. & Gomory, D. (2017). Genetic variation in Tertiary relics: The case of eastern-Mediterranean Abies (Pinaceae). Ecology and Evolution, 7, 10018-10030.
  • Hrivnak, M., Krajmerova, D., Frydl, J. & Gomory, D. (2017). Variation of cytosine methylation patterns in European beech (Fagus sylvatica L.). Tree Genetics & Genomes, 13.
  • Holliday, J. A., Aitken, S. N., Cooke, J. E. K., Fady, B., Gonzalez-Martinez, S. C., Heuertz, M., Jaramillo-Correa, J. P., Lexer, C., Staton, M., Whetten, R. W. & Plomion, C. (2017). Advances in ecological genomics in forest trees and applications to genetic resources conservation and breeding. Molecular Ecology, 26, 706-717.
  • Heinze, B. & Fussi, B. (2017). Pre-disease levels of genetic diversity and differentiation among common ash (Fraxinus excelsior L.) seedlots in Austria. Baltic Forestry, 23, 198-208.
  • Hantemirova, E. V., Heinze, B., Knyazeva, S. G., Musaev, A. M., Lascoux, M. & Semerikov, V. L. (2017). A new Eurasian phylogeographical paradigm? Limited contribution of southern populations to the recolonization of high latitude populations in Juniperus communis L.(Cupressaceae). Journal of Biogeography, 44, 271-282.
  • Giovannelli, G., Roig, A., Spanu, I., Vendramin, G. G. & Fady, B. (2017). A New Set of Nuclear Microsatellites for an Ecologically and Economically Important Conifer: the European Black Pine (Pinus nigra Arn.). Plant Molecular Biology Reporter, 35, 379-388.
  • Farwig, N., Ammer, C., Annighöfer, P., Baur, B., Behringer, D., Diekötter, T., Hotes, S., Leyer, I., Müller, J., Peter, F., Riecken, U., Bessel, A., Thorn, S., Werk, K. & Ziegenhagen, B. (2017). Bridging science and practice in conservation: Deficits and challenges from a research perspective. Basic and Applied Ecology, 24, 1-8.
  • Donnelly, K., Cottrell, J., Ennos, R. A., Vendramin, G. G., A'Hara, S., King, S., Perry, A., Wachowiak, W. & Cavers, S. (2017). Reconstructing the plant mitochondrial genome for marker discovery: a case study using Pinus. Molecular Ecology Resources, 17, 943-954.
  • Dominguez-Guerrero, I. K., del Rocio Mariscal-Lucero, S., Hernandez-Diaz, J. C., Heinze, B., Prieto-Ruiz, J. A. & Wehenkel, C. (2017). Discrimination of Picea chihuahuana Martinez populations on the basis of climatic, edaphic, dendrometric, genetic and population traits. PeerJ, 5, e3452.
  • Dobes, C., Konrad, H. & Geburek, T. (2017). Potential Population Genetic Consequences of Habitat Fragmentation in Central European Forest Trees and Associated Understorey Species-An Introductory Survey. Diversity-Basel, 9.
  • Di Pierro, E. A., Mosca, E., Gonzalez-Martinez, S. C., Binelli, G., Neale, D. B. & La Porta, N. (2017). Adaptive variation in natural Alpine populations of Norway spruce (Picea abies [L.] Karst) at regional scale: Landscape features and altitudinal gradient effects. Forest Ecology and Management, 405, 350-359.
  • Bialozyt, R., Niggemann, M. & Ziegenhagen, B. (2017). Quantification of the zygotic barrier between interbreeding taxa using gene flow data. Oikos, 126, 948-958.
  • Aleksic, J. M., Piotti, A., Geburek, T. & Vendramin, G. G. (2017). Exploring and conserving a "microcosm": whole-population genetic characterization within a refugial area of the endemic, relict conifer Picea omorika. Conservation Genetics, 18, 777-788.
  • Tsuda, Y., Chen, J., Stocks, M., Kallman, T., Sonstebo, J. H., Parducci, L., Semerikov, V., Sperisen, C., Politov, D., Ronkainen, T., Valiranta, M., Vendramin, G. G., Tollefsrud, M. M. & Lascoux, M. (2016). The extent and meaning of hybridization and introgression between Siberian spruce (Picea obovata) and Norway spruce (Picea abies): cryptic refugia as stepping stones to the west? Molecular Ecology, 25, 2773-2789.
  • Schroeder, H., Cronn, R., Yanbaev, Y., Jennings, T., Mader, M., Degen, B. & Kersten, B. (2016). Development of Molecular Markers for Determining Continental Origin of Wood from White Oaks (Quercus L. sect. Quercus). Plos One, 11.
  • Roschanski, A. M., Csillery, K., Liepelt, S., Oddou-Muratorio, S., Ziegenhagen, B., Huard, F., Ullrich, K. K., Postolache, D., Vendramin, G. G. & Fady, B. (2016). Evidence of divergent selection for drought and cold tolerance at landscape and local scales in Abies alba Mill. in the French Mediterranean Alps. Molecular Ecology, 25, 776-794.
  • Reyes-Murillo, C. A., Hernandez-Diaz, J. C., Heinze, B., Prieto-Ruiz, J. A., Lopez-Sanchez, C. A. & Wehenkel, C. (2016). Spatial genetic structure in seed stands of Pinus lumholtzii B.L. Rob. & Fernald in Durango, Mexico. Tree Genetics & Genomes, 12, 1-10.
  • Rellstab, C., Zoller, S., Walthert, L., Lesur, I., Bodénès, C., Pluess, A. R., Sperisen, C., Kremer, A. & Gugerli, F. (2016). Signatures of local adaptation in candidate genes of oaks (Quercus spp.) in respect to present and future climatic conditions. Molecular Ecology, 25, 5907–5924.
  • Rellstab, C., Bühler, A., Graf, R., Folly, C. & Gugerli, F. (2016). Using joint multivariate analyses of leaf morphology and molecular-genetic markers for taxon identification in three hybridizing European white oak species (Quercus spp.). Annals of Forest Science, 73, 669–679.
  • Pluess, A. R., Frank, A., Heiri, C., Lalaguee, H., Vendramin, G. G. & Oddou-Muratorio, S. (2016). Genome-environment association study suggests local adaptation to climate at the regional scale in Fagus sylvatica. New Phytologist, 210, 589-601.
  • Plomion, C., Bastien, C., Bogeat-Triboulot, M. B., Bouffier, L., Dejardin, A., Duplessis, S., Fady, B., Heuertz, M., Le Gac, A. L., Le Provost, G., Legue, V., Lelu-Walter, M. A., Leple, J. C., Maury, S., Morel, A., Oddou-Muratorio, S., Pilate, G., Sanchez, L., Scotti, I., Scotti-Saintagne, C., Segura, V., Trontin, J. F. & Vacher, C. (2016). Forest tree genomics: 10 achievements from the past 10 years and future prospects. Annals of Forest Science, 73, 77-103.
  • Mosca, E., Gugerli, F., Eckert, A. J. & Neale, D. B. (2016) Signatures of natural selection on Pinus cembra and P. mugo along altitudinal gradients in the Alps. In: Tree Genetics & Genomes, p. 15.
  • Lu, M., Krutovsky, K. V., Nelson, C. D., Koralewski, T. E., Byram, T. D. & Loopstra, C. A. (2016). Exome genotyping, linkage disequilibrium and population structure in loblolly pine (Pinus taeda L.). BMC Genomics, 17, 730.
  • Leonarduzzi, C., Piotti, A., Spanu, I. & Vendramin, G. G. (2016). Effective gene flow in a historically fragmented area at the southern edge of silver fir (Abies alba Mill.) distribution. Tree Genetics & Genomes, 12.
  • Krajmerova, D., Paule, L., Zhelev, P., Volekova, M., Evtimov, I., Gagov, V. & Gomory, D. (2016). Natural hybridization in eastern-Mediterranean firs: The case of Abies borisii-regis. Plant Biosystems, 150, 1189-1199.
  • Koralewski, T. E., Mateos, M. & Krutovsky, K. V. (2016). Conflicting genomic signals affect phylogenetic inference in four species of North American pines. AoB PLANTS, 8.
  • Kersten, B., Rampant, P. F., Mader, M., Le Paslier, M. C., Bounon, R., Berard, A., Vettori, C., Schroeder, H., Leple, J. C. & Fladung, M. (2016). Genome Sequences of Populus tremula Chloroplast and Mitochondrion: Implications for Holistic Poplar Breeding. Plos One, 11.
  • Johnson, J. S., Gaddis, K. D., Cairns, D. M., Lafon, C. W. & Krutovsky, K. V. (2016). Plant responses to global change: next generation biogeography. Physical Geography, 1-27.
  • Fady, B., Cottrell, J., Ackzell, L., Alia, R., Muys, B., Prada, A. & Gonzalez-Martinez, S. C. (2016). Forests and global change: what can genetics contribute to the major forest management and policy challenges of the twenty-first century? Regional Environmental Change, 16, 927-939.
  • Fady, B., Aravanopoulos, F. A., Alizoti, P., Matyas, C., von Wuhlisch, G., Westergren, M., Belletti, P., Cvjetkovic, B., Ducci, F., Huber, G., Kelleher, C. T., Khaldi, A., Kharrat, M. B. D., Kraigher, H., Kramer, K., Muhlethaler, U., Peric, S., Perry, A., Rousi, M., Sbay, H., Stojnic, S., Tijardovic, M., Tsvetkov, I., Varela, M. C., Vendramin, G. G. & Zlatanov, T. (2016). Evolution-based approach needed for the conservation and silviculture of peripheral forest tree populations. Forest Ecology and Management, 375, 66-75.
  • Brousseau, L., Postolache, D., Lascoux, M., Drouzas, A. D., Kallman, T., Leonarduzzi, C., Liepelt, S., Piotti, A., Popescu, F., Roschanski, A. M., Zhelev, P., Fady, B. & Vendramin, G. G. (2016). Local Adaptation in European Firs Assessed through Extensive Sampling across Altitudinal Gradients in Southern Europe. Plos One, 11.
  • Bosela, M., Popa, I., Gomory, D., Longauer, R., Tobin, B., Kyncl, J., Kyncl, T., Nechita, C., Petras, R., Sidor, C. G., Seben, V. & Buntgen, U. (2016). Effects of post-glacial phylogeny and genetic diversity on the growth variability and climate sensitivity of European silver fir. Journal of Ecology, 104, 716-724 %718 May %! Effects of post-glacial phylogeny and genetic diversity on the growth variability and climate sensitivity of European silver fir %@ 0022-0477.
  • Belokon, M. M., Politov, D. V., Mudrik, E. A., Polyakova, T. A., Shatokhina, A. V., Belokon, Y. S., Oreshkova, N. V., Putintseva, Y. A., Sharov, V. V., Kuzmin, D. A. & Krutovsky, K. V. (2016). Development of microsatellite genetic markers in Siberian stone pine (Pinus sibirica Du Tour) based on the de novo whole genome sequencing. Russian Journal of Genetics, 52, 1263-1271.
  • Bagnoli, F., Tsuda, Y., Fineschi, S., Bruschi, P., Magri, D., Zhelev, P., Paule, L., Simeone, M. C., Gonzalez-Martinez, S. C. & Vendramin, G. G. (2016). Combining molecular and fossil data to infer demographic history of Quercus cerris: insights on European eastern glacial refugia. Journal of Biogeography, 43, 679-690.
  • Babushkina, E. A., Vaganov, E. A., Grachev, A. M., Oreshkova, N. V., Belokopytova, L. V., Kostyakova, T. V. & Krutovsky, K. V. (2016). The effect of individual genetic heterozygosity on general homeostasis, heterosis and resilience in Siberian larch (Larix sibirica Ledeb.) using dendrochronology and microsatellite loci genotyping. Dendrochronologia, 38, 26-37.
  • Wagner, S., Liepelt, S., Gerber, S. & Petit, R. J. (2015). Within-Range Translocations and Their Consequences in European Larch. PLOS ONE, 10, e0127516.
  • Semerikov, V. L., Putintseva, Y. A., Oreshkova, N. V., Semerikova, S. A. & Krutovsky, K. V. (2015). Development of new mitochondrial DNA markers in Scots pine (Pinus sylvestris L.) for population and phylogeographic studies. Russian Journal of Genetics, 51, 1199-1203.
  • Rellstab, C., Gugerli, F., Eckert, A. J., Hancock, A. M. & Holderegger, R. (2015). A practical guide to environmental association analysis in landscape genomics. Molecular Ecology, 24, 4348–4370.
  • Pakull, B., Kersten, B., Luneburg, J. & Fladung, M. (2015). A simple PCR-based marker to determine sex in aspen. Plant Biology, 17, 256-261.
  • Mayol, M., Riba, M., Gonzalez-Martinez, S. C., Bagnoli, F., de Beaulieu, J. L., Berganzo, E., Burgarella, C., Dubreuil, M., Krajmerova, D., Paule, L., Romsakova, I., Vettori, C., Vincenot, L. & Vendramin, G. G. (2015). Adapting through glacial cycles: insights from a long-lived tree (Taxus baccata). New Phytologist, 208, 973-986.
  • Kersten, B., Voss, M. M. & Fladung, M. (2015). Development of mitochondrial SNP markers in different Populus species. Trees-Structure and Function, 29, 575-582.
  • Gomory, D., Foffova, E., Longauer, R. & Krajmerova, D. (2015). Memory effects associated with early-growth environment in Norway spruce and European larch. European Journal of Forest Research, 134, 89-97 %88 Jan %! Memory effects associated with early-growth environment in Norway spruce and European larch %@ 1612-4669.
  • George, J. P., Konrad, H., Collin, E., Thevenet, J., Ballian, D., Idzojtic, M., Kamm, U., Zhelev, P. & Geburek, T. (2015). High molecular diversity in the true service tree (Sorbus domestica) despite rareness: data from Europe with special reference to the Austrian occurrence. Annals of Botany, 115, 1105-1115.
  • Ćalić, I., Bussotti, F., Martínez-García, P. & Neale, D. (2015). Recent landscape genomics studies in forest trees—what can we believe? Tree Genetics & Genomes, 12, 1-7.
  • Bella, E., Liepelt, S., Parducci, L. & Drouzas, A. D. (2015). Genetic insights into the hybrid origin of Abies × borisii-regis Mattf. Plant Systematics and Evolution, 301, 749-759.
  • Behringer, D., Zimmermann, H., Ziegenhagen, B. & Liepelt, S. (2015). Differential Gene Expression Reveals Candidate Genes for Drought Stress Response in Abies alba (Pinaceae). PLOS ONE, 10, e0124564.
  • Scalfi, M., Mosca, E., Di Pierro, E. A., Troggio, M., Vendramin, G. G., Sperisen, C., La Porta, N. & Neale, D. B. (2014). Micro- and macro-geographic scale effect on the molecular imprint of selection and adaptation in Norway Spruce. PLOS ONE, 9.
  • Postolache, D., Leonarduzzi, C., Piotti, A., Spanu, I., Roig, A., Fady, B., Roschanski, A., Liepelt, S. & Vendramin, G. G. (2014). Transcriptome versus Genomic Microsatellite Markers: Highly Informative Multiplexes for Genotyping Abies alba Mill. and Congeneric Species. Plant Molecular Biology Reporter, 32, 750-760.
  • Pavia, I., Mengl, M., Gaspar, M. J., Carvalho, A., Heinze, B. & Lima-Brito, J. (2014). Preliminary evidence of two potential native populations of Pinus sylvestris L. in Portugal based on nuclear and choloroplastidial SSR markers. Austrian Journal of Forest Research, 131, 1-22.
  • Mosca, E., Gonzalez-Martinez, S. C. & Neale, D. B. (2014). Environmental versus geographical determinants of genetic structure in two subalpine conifers. New Phytologist, 201, 180-192.
  • Lendvay, B., Hohn, M., Brodbeck, S., Mindrescu, M. & Gugerli, F. (2014). Genetic structure in Pinus cembra from the Carpathian Mountains inferred from nuclear and chloroplast microsatellites confirms post-glacial range contraction and identifies introduced individuals. Tree Genetics & Genomes, 10, 1419-1433.
  • Lalague, H., Csillery, K., Oddou-Muratorio, S., Safrana, J., de Quattro, C., Fady, B., Gonzalez-Martinez, S. C. & Vendramin, G. G. (2014). Nucleotide diversity and linkage disequilibrium at 58 stress response and phenology candidate genes in a European beech (Fagus sylvatica L.) population from southeastern France. Tree Genetics & Genomes, 10, 15-26.
  • Krutovsky, K. V., Tretyakova, I. N., Oreshkova, N. V., Pak, M. E., Kvitko, O. V. & Vaganov, E. A. (2014). Somaclonal variation of haploid in vitro tissue culture obtained from Siberian larch (Larix sibirica Ledeb.) megagametophytes for whole genome de novo sequencing. In Vitro Cellular & Developmental Biology-Plant, 50, 655-664.
  • Koralewski, T. E., Brooks, J. E. & Krurovsky, K. V. (2014). Molecular evolution of drought tolerance and wood strength related candidate genes in loblolly pine (Pinus taeda L.). Silvae Genetica, 63, 59-66.
  • Heinze, B., Koziel-Monte, A. & Jahn, D. (2014). Analysis of Variation in Chloroplast DNA Sequences. In: P. Besse (Ed. Molecular Plant Taxonomy: Methods and Protocols, pp. 85-120, Totowa, NJ. Humana Press.
  • Gerber, S., Chadœuf, J., Gugerli, F., Lascoux, M., Buiteveld, J., Cottrell, J. E., Dounavi, A., Fineschi, S., Forrest, L. L., Fogelqvist, J., Goicoechea, P. G., Jensen, J. S., Salvini, D., Vendramin, G. G. & Kremer, A. (2014) High rates of gene flow by pollen and seed in oak populations across Europe. In: PLoS ONE, p. 16.
  • Csillery, K., Lalague, H., Vendramin, G. G., Gonzalez-Martinez, S. C., Fady, B. & Oddou-Muratorio, S. (2014). Detecting short spatial scale local adaptation and epistatic selection in climate-related candidate genes in European beech (Fagus sylvatica) populations. Molecular Ecology, 23, 4696-4708.
  • Chen, J., Tsuda, Y., Stocks, M., Kallman, T., Xu, N. N., Karkkainen, K., Huotari, T., Semerikov, V. L., Vendramin, G. G. & Lascoux, M. (2014). Clinal Variation at Phenology-Related Genes in Spruce: Parallel Evolution in FTL2 and Gigantea? Genetics, 197, 1025-+.
  • Cheddadi, R., Birks, H. J. B., Tarroso, P., Liepelt, S., Gömöry, D., Dullinger, S., Meier, E. S., Hülber, K., Maiorano, L. & Laborde, H. (2014). Revisiting tree-migration rates: Abies alba (Mill.), a case study. Vegetation History and Archaeobotany, 23, 113-122.
  • Born, N., Behringer, D., Liepelt, S., Beyer, S., Schwerdtfeger, M., Ziegenhagen, B. & Koch, M. (2014). Monitoring Plant Drought Stress Response Using Terahertz Time-Domain Spectroscopy. Plant Physiology, 164, 1571-1577.
  • Awad, L., Fady, B., Khater, C., Roig, A. & Cheddadi, R. (2014). Genetic Structure and Diversity of the Endangered Fir Tree of Lebanon (Abies cilicica Carr.): Implications for Conservation. Plos One, 9.
  • Alfaro, R. I., Fady, B., Vendramin, G. G., Dawson, I. K., Fleming, R. A., Saenz-Romero, C., Lindig-Cisneros, R. A., Murdock, T., Vinceti, B., Navarro, C. M., Skroppa, T., Baldinelli, G., El-Kassaby, Y. A. & Loo, J. (2014). The role of forest genetic resources in responding to biotic and abiotic factors in the context of anthropogenic climate change. Forest Ecology and Management, 333, 76-87.
  • Steinbrecher, R., Contran, N., Gugerli, F., Schnitzler, J.-P., Zimmer, I., Menard, T. & Günthardt-Goerg, M. (2013). Inter- and intra-specific variability in isoprene production and photosynthesis of Central European oak species. Plant Biology, 15 (Suppl. 1), 148–156.
  • Schueler, S., Kapeller, S., Konrad, H., Geburek, T., Mengl, M., Bozzano, M., Koskela, J., Lefe'vre, F., Hubert, J., Kraigher, H., Longauer, R. & Olrik, D. C. (2013). Adaptive genetic diversity of trees for forest conservation in a future climate: a case study on Norway spruce in Austria. Biodiversity and Conservation, 22, 1151-1166.
  • Roschanski, A. M., Fady, B., Ziegenhagen, B. & Liepelt, S. (2013). Annotation and Re-Sequencing of Genes from De Novo Transcriptome Assembly of Abies Alba (Pinaceae). Applications in Plant Sciences, 1.
  • Piotti, A., Leonardi, S., Heuertz, M., Buiteveld, J., Geburek, T., Gerber, S., Kramer, K., Vettori, C. & Vendramin, G. G. (2013). Within-Population Genetic Structure in Beech (Fagus sylvatica L.) Stands Characterized by Different Disturbance Histories: Does Forest Management Simplify Population Substructure? Plos One, 8.
  • Pâques, L. E., Foffová, E., Heinze, B., Lelu-Walter, M.-A., Liesebach, M. & Philippe, G. (2013). Larches (Larix sp.). In: L. E. Pâques (Ed. Forest Tree Breeding in Europe: Current State-of-the-Art and Perspectives, pp. 13-122, Dordrecht. Springer Netherlands.
  • Lefevre, F., Koskela, J., Hubert, J., Kraigher, H., Longauer, R., Olrik, D. C., Schueler, S., Bozzano, M., Alizoti, P., Bakys, R., Baldwin, C., Ballian, D., Black-Samuelsson, S., Bednarova, D., Bordacs, S., Collin, E., De Cuyper, B., De Vries, S. M. G., Eysteinsson, T., Frydl, J., Haverkamp, M., Ivankovic, M., Konrad, H., Koziol, C., Maaten, T., Paino, E. N., Ozturk, H., Pandeva, I. D., Parnuta, G., Pilipovic, A., Postolache, D., Ryan, C., Steffenrem, A., Varela, M. C., Vessella, F., Volosyanchuk, R. T., Westergren, M., Wolter, F., Yrjana, L. & Zarina, I. (2013). Dynamic Conservation of Forest Genetic Resources in 33 European Countries. Conservation Biology, 27, 373-384.
  • Koskela, J., Lefevre, F., Schueler, S., Kraigher, H., Olrik, D. C., Hubert, J., Longauer, R., Bozzano, M., Yrjänä, L., Alizoti, P., Rotach, P., Vietto, L., Bordacs, S., Myking, T., Eysteinsson, T., Souvannavong, O., Fady, B., De Cuyper, B., Heinze, B., von Wühisch, G., Ducousso, A. & Ditlevsen, B. (2013). Translating conservation genetics into management: Pan-European minimum requirements for dynamic conservation units of forest tree genetic diversity. Biological Conservation, 157, 39-49.
  • King, G. M., Gugerli, F., Fonti, P. & Frank, D. C. (2013). Tree growth response along an elevational gradient: climate or genetics? Oecologia, 173, 1587–1600.
  • Kersten, B., Ghirardo, A., Schnitzler, J. P., Kanawati, B., Schmitt-Kopplin, P., Fladung, M. & Schroeder, H. (2013). Integrated transcriptomics and metabolomics decipher differences in the resistance of pedunculate oak to the herbivore Tortrix viridana L. Bmc Genomics, 14.
  • Heinze, B. & Holzer, K. (2013). A review of research on Pinus cembra in Austria, with special reference to the conservation of genetic resources. 5th Symposium for Research in Protected Areas, 10 to 12 June 2013, Mittersill; Conference Volume, 5, 279–283.
  • Gugerli, F., Brandl, R., Castagneyrol, B., Franc, A., Jactel, H., Koelewijn, H.-P., Martin, F., Peter, M., Pritsch, K., Schröder, H., Smulders, M. J. M., Kremer, A. & Ziegenhagen, B. (2013). Community genetics in the time of next-generation molecular technologies. Molecular Ecology, 22, 3198-3207.
  • Chhatre, V. E., Byram, T. D., Neale, D. B., Wegrzyn, J. L. & Krutovsky, K. V. (2013). Genetic structure and association mapping of adaptive and selective traits in the east Texas loblolly pine (Pinus taeda L.) breeding populations. Tree Genetics & Genomes, 9, 1161-1178.
  • Salzer, K. & Gugerli, F. (2012). Reduced fitness at early life stages in peripheral versus core populations of Swiss stone pine (Pinus cembra) is not reflected by levels of inbreeding in seed families. Alpine Botany, 122, 75–85.
  • Paffetti, D., Travaglini, D., Buonamici, A., Nocentini, S., Vendramin, G. G., Giannini, R. & Vettori, C. (2012). The influence of forest management on beech (Fagus sylvatica L.) stand structure and genetic diversity. Forest Ecology and Management, 284, 34-44.
  • Mosca, E., Eckert, A. J., Liechty, J. D., Wegrzyn, J. L., La Porta, N., Vendramin, G. G. & Neale, D. B. (2012). Contrasting patterns of nucleotide diversity for four conifers of Alpine European forests. Evolutionary Applications, 5, 762-775.
  • Mosca, E., Eckert, A. J., Di Pierro, E. A., Rocchini, D., La Porta, N., Belletti, P. & Neale, D. B. (2012). The geographical and environmental determinants of genetic diversity for four alpine conifers of the European Alps. Molecular Ecology, 21, 5530-5545.
  • Landergott, U., Gugerli, F., Hoebee, S. E., Finkeldey, R. & Holderegger, R. (2012). Effects of seed mass on seedling height and competition in European white oaks. Flora, 207, 721–725.
  • Krutovsky, K., Burczyk, J., Chybicki, I., Finkeldey, R., Pyhäjärvi, T. & Robledo-Arnuncio, J. (2012). Gene Flow, Spatial Structure, Local Adaptation, and Assisted Migration in Trees. In: R. J. Schnell & P. M. Priyadarshan (Eds.), Genomics of Tree Crops, pp. 71-116 Springer New York.
  • Kremer, A., Abbott, A. G., Carlson, J. E., Manos, P. S., Plomion, C., Sisco, P., Staton, M. E., Ueno, S. & Vendramin, G. G. (2012). Genomics of Fagaceae. Tree Genetics & Genomes, 8, 583-610.
  • Heer, K., Machado, C. A., Himler, A. G., Herre, E. A., Kalko, E. K. V. & Dick, C. W. (2012). Anonymous and EST-based Microsatellite DNA markers that transfer broadly across the fig tree genus (Ficus L. Moraceae). American Journal of Botany, 99, e330-e333.
  • Gomory, D., Paule, L., Krajmerova, D., Romsakova, I. & Piecka, J. (2012). Gene exchange across a postglacial contact zone in Fraxinus excelsior L. Silvae Genetica, 61, 18-27 %! Gene exchange across a postglacial contact zone in Fraxinus excelsior L %@ 0037-5349.
  • Gomory, D., Paule, L., Krajmerova, D., Romsakova, I. & Longauer, R. (2012). Admixture of genetic lineages of different glacial origin: a case study of Abies alba Mill. in the Carpathians. Plant Systematics and Evolution, 298, 703-712 %708 Apr %! Admixture of genetic lineages of different glacial origin: a case study of Abies alba Mill. in the Carpathians %@ 0378-2697.
  • Fady, B. (2012). Biogeography of neutral genes and recent evolutionary history of pines in the Mediterranean Basin. Annals of Forest Science, 69, 421-428.
  • Cremer, E., Ziegenhagen, B., Schulerowitz, K., Mengel, C., Donges, K., Bialozyt, R., Hussendörfer, E. & Liepelt, S. (2012). Local seed dispersal in European silver fir (Abies alba Mill.): lessons learned from a seed trap experiment. Trees, 26, 987-996.
  • Conord, C., Gurevitch, J. & Fady, B. (2012). Large-scale longitudinal gradients of genetic diversity: a meta-analysis across six phyla in the Mediterranean basin. Ecology and Evolution, 2, 2595-2609.
  • Burgarella, C., Navascues, M., Zabal-Aguirre, M., Berganzo, E., Riba, M., Mayol, M., Vendramin, G. G. & Gonzalez-Martinez, S. C. (2012). Recent population decline and selection shape diversity of taxol-related genes. Molecular Ecology, 21, 3006-3021.
  • Bodenes, C., Chancerel, E., Gailing, O., Vendramin, G. G., Bagnoli, F., Durand, J., Goicoechea, P. G., Soliani, C., Villani, F., Mattioni, C., Koelewijn, H. P., Murat, F., Salse, J., Roussel, G., Boury, C., Alberto, F., Kremer, A. & Plomion, C. (2012). Comparative mapping in the Fagaceae and beyond with EST-SSRs. Bmc Plant Biology, 12.